Index

A

adj_mi() (in module clusim.sim)

adjrand_index() (in module clusim.sim)

C

calculate_ppr_with_power_iteration() (in module clusim.clusimelement) cL1() (in module clusim.clusimelement) classification_error() (in module clusim.sim) clugen module clusim.clugen module clusim.clusimelement module clusim.clustering module clusimelement module

cluster_missing_elements() (in module clusim.clugen) clustering module Clustering (class in clusim.clustering), [1] clustering_from_igraph_cover() (clusim.clustering.Clustering method), [1] clusteringerror (in module clusim) contingency_table() (in module clusim.sim) copy() (clusim.clustering.Clustering method), [1] corrected_chance() (in module clusim.sim) count_pairwise_cooccurence() (in module clusim.sim) czekanowski_index() (in module clusim.sim)

D

default() (clusim.clustering.SetEncoder method)

dice_index() (in module clusim.sim) downstream_elements() (clusim.clustering.Clustering method), [1]

E

element_sim() (in module clusim.clusimelement) element_sim_elscore() (in module clusim.clusimelement)

enumerate_random_partition_num() (in module clusim.clugen) expected_mi() (in module clusim.sim) expected_rand_index() (in module clusim.sim)

F

find_clu_size_seq() (clusim.clustering.Clustering method), [1] find_groups_in_cluster() (in module clusim.clusimelement) find_num_overlap() (clusim.clustering.Clustering method), [1] fmeasure() (in module clusim.sim) fowlkes_mallows_index() (in module clusim.sim) from_clu2elm_dict() (clusim.clustering.Clustering method), [1]

from_cluster_list() (clusim.clustering.Clustering method), [1] from_dict() (clusim.clustering.Clustering method), [1] from_digraph() (clusim.clustering.Clustering method), [1] from_elm2clu_dict() (clusim.clustering.Clustering method), [1] from_membership_list() (clusim.clustering.Clustering method), [1] from_scipy_linkage() (clusim.clustering.Clustering method), [1]

G

generate_random_partition_all() (in module clusim.clugen)

geometric_accuracy() (in module clusim.sim)

J

jaccard_index() (in module clusim.sim)

L

load() (clusim.clustering.Clustering method), [1]

M

make_affinity_matrix() (in module clusim.clusimelement) make_cielg() (in module clusim.clusimelement) make_equal_clustering() (in module clusim.clugen) make_random_clustering() (in module clusim.clugen) make_random_dendrogram() (in module clusim.clugen) make_singleton_clustering() (in module clusim.clugen) merge_clusters() (clusim.clustering.Clustering method), [1]

mi() (in module clusim.sim) module clugen clusim.clugen clusim.clusimelement clusim.clustering clusimelement clustering

N

nmi() (in module clusim.sim)

numerical_ppr_scores() (in module clusim.clusimelement)

O

omega_index() (in module clusim.sim)

onmi() (in module clusim.sim) overlap_quality() (in module clusim.sim)

P

pearson_correlation() (in module clusim.sim) ppr_partition() (in module clusim.clusimelement)

print_clustering() (in module clusim.clustering) purity_index() (in module clusim.sim)

R

rand_index() (in module clusim.sim) relabel_clusters_by_size() (clusim.clustering.Clustering method), [1] relabel_clusters_to_match() (clusim.clustering.Clustering method), [1]

remap2match() (in module clusim.clustering) rmi() (in module clusim.sim) rogers_tanimoto_index() (in module clusim.sim)

S

sample_expected_sim() (in module clusim.sim) save() (clusim.clustering.Clustering method), [1] SetEncoder (class in clusim.clustering)

shuffle_memberships() (in module clusim.clugen) shuffle_memberships_pa() (in module clusim.clugen) sorensen_index() (in module clusim.sim) southwood_index() (in module clusim.sim)

T

to_clu2elm_dict() (clusim.clustering.Clustering method), [1] to_cluster_list() (clusim.clustering.Clustering method), [1]

to_dict() (clusim.clustering.Clustering method), [1] to_elm2clu_dict() (clusim.clustering.Clustering method), [1] to_membership_list() (clusim.clustering.Clustering method), [1]

V

validate_clustering() (clusim.clustering.Clustering method), [1]

vi() (in module clusim.sim)